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1

Changes in root-associated microbial communities are determined by species-specific plant growth responses to stress and disturbance

Abderrahim Bouasria, Tarfa Mustafa, Francesco De Bello, Lucie Zinger, Guy Lemperiere, Roberto A. Geremia, Philippe Choler

Journal:

European Journal of Soil Biology

Year:

2012

Language:

english

File:

PDF, 318 KB

english, 2012

2

Contrasting Diversity Patterns of Crenarchaeal, Bacterial and Fungal Soil Communities in an Alpine Landscape

Zinger, Lucie, Lejon, David P. H., Baptist, Florence, Bouasria, Abderrahim, Aubert, Serge, Geremia, Roberto A., Choler, Philippe, Gilbert, Jack Anthony

Journal:

Year:

2011

Language:

english

File:

PDF, 330 KB

english, 2011

3

[Advances in Ecological Research] || Advances and prospects of environmental DNA in neotropical rainforests

Year:

2020

Language:

english

File:

PDF, 790 KB

english, 2020

4

Improvements of Polymerase Chain Reaction and Capillary Electrophoresis Single-Strand Conformation Polymorphism Methods in Microbial Ecology: Toward a High-throughput Method for Microbial Diversity Studies in Soil

Lucie Zinger, Jérôme Gury, Frédéric Giraud, Serge Krivobok, Ludovic Gielly, Pierre Taberlet, Roberto A. Geremia

Journal:

Microbial Ecology

Year:

2007

Language:

english

File:

PDF, 586 KB

english, 2007

5

Assessment of soil fungal diversity in different alpine tundra habitats by means of pyrosequencing

Guillaume Lentendu, Lucie Zinger, Stéphanie Manel, Eric Coissac, Philippe Choler, Roberto A. Geremia, Christelle Melodelima

Journal:

Fungal Diversity

Year:

2011

Language:

english

File:

PDF, 512 KB

english, 2011

6

Microbial diversity in alpine tundra soils correlates with snow cover dynamics

Zinger, Lucie, Shahnavaz, Bahar, Baptist, Florence, Geremia, Roberto A, Choler, Philippe

Journal:

The ISME Journal

Year:

2009

Language:

english

File:

PDF, 347 KB

english, 2009

7

Improvements of Polymerase Chain Reaction and Capillary Electrophoresis Single-Strand Conformation Polymorphism Methods in Microbial Ecology: Toward a High-Throughput Method for Microbial Diversity Studies in Soil

Lucie Zinger, Jérôme Gury, Frédéric Giraud, Serge Krivobok, Ludovic Gielly, Pierre Taberlet and Roberto A. Geremia

Journal:

Microbial Ecology

Year:

2007

Language:

english

File:

PDF, 2.46 MB

english, 2007

8

Phylogenetic Clustering Reveals Selective Events Driving the Turnover of Bacterial Community in Alpine Tundra Soils

Shahnavaz, Bahar, Zinger, Lucie, Lavergne, Sébastien, Choler, Philippe, Geremia, Roberto A.

Journal:

Arctic Antarctic and Alpine Research

Year:

2012

Language:

english

File:

PDF, 277 KB

english, 2012

9

Variations in snow depth modify N-related soil microbial abundances and functioning during winter in subalpine grassland

Jusselme, My-Dung, Saccone, Patrick, Zinger, Lucie, Faure, Mathieu, Le Roux, Xavier, Guillaumaud, Nadine, Bernard, Lionel, Clement, Jean-Christophe, Poly, Franck

Journal:

Soil Biology and Biochemistry

Year:

2016

Language:

english

File:

PDF, 588 KB

english, 2016

10

Phylogenetic Clustering Reveals Selective Events Driving the Turnover of Bacterial Community in Alpine Tundra Soils

Bahar Shahnavaz, Lucie Zinger, Sébastien Lavergne, Philippe Choler and Roberto A. Geremia

Journal:

Arctic Antarctic and Alpine Research

Year:

2012

Language:

english

File:

PDF, 1.46 MB

english, 2012

11

Latent Dirichlet Allocation reveals spatial and taxonomic structure in a DNA‐based census of soil biodiversity from a tropical forest

Sommeria‐Klein, Guilhem, Zinger, Lucie, Coissac, Eric, Iribar, Amaia, Schimann, Heidy, Taberlet, Pierre, Chave, Jérôme

Journal:

Molecular Ecology Resources

Year:

2019

Language:

english

File:

PDF, 25.52 MB

english, 2019

12

Exonuclease activity of proofreading DNA polymerases is at the origin of artifacts in molecular profiling studies

Jerome Gury, Lucie Zinger, Ludovic Gielly, Pierre Taberlet, Roberto A. Geremia

Journal:

ELECTROPHORESIS

Year:

2008

Language:

english

File:

PDF, 366 KB

english, 2008

13

Plant Chemical Defense Induced by a Seed-Eating Pollinator Mutualist

Christiane Gallet, Sebastien Ibanez, Lucie Zinger, François R. Taravel, Michel Trierweiler, Isabelle Jeacomine, Laurence Despres

Journal:

Journal of Chemical Ecology

Year:

2007

Language:

english

File:

PDF, 218 KB

english, 2007

14

Two decades of describing the unseen majority of aquatic microbial diversity

LUCIE ZINGER, ANGÉLIQUE GOBET, THOMAS POMMIER

Journal:

Molecular Ecology

Year:

2012

Language:

english

File:

PDF, 342 KB

english, 2012

15

CE-SSCP and CE-FLA, simple and high-throughput alternatives for fungal diversity studies

Lucie Zinger, Jérôme Gury, Olivier Alibeu, Delphine Rioux, Ludovic Gielly, Lucile Sage, François Pompanon, Roberto A. Geremia

Journal:

Journal of Microbiological Methods

Year:

2008

Language:

english

File:

PDF, 1.20 MB

english, 2008

16

Corrigendum to “CE-SSCP and CE-FLA, simple and high-throughput alternatives for fungal diversity studies” [Journal of Microbiological Methods 72 (2008) 42–53]

Lucie Zinger, Jérôme Gury, Olivier Alibeu, Delphine Rioux, Ludovic Gielly, Lucile Sage, François Pompanon, Roberto A. Geremia

Journal:

Journal of Microbiological Methods

Year:

2008

Language:

english

File:

PDF, 195 KB

english, 2008

17

Shedding new light on the diet of Norwegian lemmings: DNA metabarcoding of stomach content

Eeva M. Soininen, Lucie Zinger, Ludovic Gielly, Eva Bellemain…

Journal:

Year:

2013

Language:

english

File:

PDF, 265 KB

english, 2013

18

Landscape-scale distribution patterns of earthworms inferred from soil DNA

Pansu, Johan, De Danieli, Sébastien, Puissant, Jérémy, Gonzalez, Jean-Maxime, Gielly, Ludovic, Cordonnier, Thomas, Zinger, Lucie, Brun, Jean-Jacques, Choler, Philippe, Taberlet, Pierre, Cécillon, Laur

Journal:

Soil Biology and Biochemistry

Year:

2015

Language:

english

File:

PDF, 408 KB

english, 2015

19

Reconstructing long-term human impacts on plant communities: an ecological approach based on lake sediment DNA

Pansu, Johan, Giguet-Covex, Charline, Ficetola, Gentile Francesco, Gielly, Ludovic, Boyer, Frédéric, Zinger, Lucie, Arnaud, Fabien, Poulenard, Jérôme, Taberlet, Pierre, Choler, Philippe

Journal:

Molecular Ecology

Year:

2015

Language:

english

File:

PDF, 3.34 MB

english, 2015

20

Extracellular DNA extraction is a fast, cheap and reliable alternative for multi-taxa surveys based on soil DNA

Zinger, Lucie, Chave, Jérôme, Coissac, Eric, Iribar, Amaia, Louisanna, Eliane, Manzi, Sophie, Schilling, Vincent, Schimann, Heidy, Sommeria-Klein, Guilhem, Taberlet, Pierre

Journal:

Soil Biology and Biochemistry

Year:

2016

Language:

english

File:

PDF, 379 KB

english, 2016

21

Metagenome skimming for phylogenetic community ecology: a new era in biodiversity research

Papadopoulou, Anna, Taberlet, Pierre, Zinger, Lucie

Journal:

Molecular Ecology

Year:

2015

Language:

english

File:

PDF, 179 KB

english, 2015

22

Coalescing molecular evolution and DNA barcoding

Zinger, Lucie, Philippe, Hervé

Journal:

Molecular Ecology

Year:

2016

Language:

english

File:

PDF, 188 KB

english, 2016

23

Contrasting microbial biogeographical patterns between anthropogenic subalpine grasslands and natural alpine grasslands

Geremia, Roberto A., Pușcaș, Mihai, Zinger, Lucie, Bonneville, Jean-Marc, Choler, Philippe

Journal:

New Phytologist

Year:

2016

Language:

english

File:

PDF, 1.21 MB

english, 2016

24

Vector soup: high-throughput identification of Neotropical phlebotomine sand flies using metabarcoding

Kocher, Arthur, Gantier, Jean-Charles, Gaborit, Pascal, Zinger, Lucie, Holota, Helene, Valiere, Sophie, Dusfour, Isabelle, Girod, Romain, Bañuls, Anne-Laure, Murienne, Jerome

Journal:

Molecular Ecology Resources

Year:

2016

Language:

english

File:

PDF, 1.42 MB

english, 2016

25

Inferring neutral biodiversity parameters using environmental DNA data sets

Sommeria-Klein, Guilhem, Zinger, Lucie, Taberlet, Pierre, Coissac, Eric, Chave, Jérôme

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 710 KB

english, 2016

26

Evaluation of short mitochondrial metabarcodes for the identification of Amazonian mammals

Kocher, Arthur, de Thoisy, Benoit, Catzeflis, François, Huguin, Mailis, Valière, Sophie, Zinger, Lucie, Bañuls, Anne-Laure, Murienne, Jérôme, Gaggiotti, Oscar

Journal:

Methods in Ecology and Evolution

Year:

2017

Language:

english

File:

PDF, 601 KB

english, 2017

27

Not only mosses: lemming winter diets as described by DNA metabarcoding

Soininen, Eeva M., Zinger, Lucie, Gielly, Ludovic, Yoccoz, Nigel G., Henden, John-Andre, Ims, Rolf A.

Journal:

Year:

2017

Language:

english

File:

PDF, 706 KB

english, 2017

28

Climate warming reduces gut microbiota diversity in a vertebrate ectotherm

Bestion, Elvire, Jacob, Staffan, Zinger, Lucie, Di Gesu, Lucie, Richard, Murielle, White, Joël, Cote, Julien

Journal:

Nature Ecology & Evolution

Year:

2017

Language:

english

File:

PDF, 269 KB

english, 2017

29

Chemical regulation of body feather microbiota in a wild bird

Jacob, Staffan, Sallé, Louis, Zinger, Lucie, Chaine, Alexis S., Ducamp, Christine, Boutault, Léa, Russell, Andrew F., Heeb, Philipp

Journal:

Molecular Ecology

Year:

2018

Language:

english

File:

PDF, 748 KB

english, 2018

30

Ubiquitous abundance distribution of non-dominant plankton across the global ocean

Ser-Giacomi, Enrico, Zinger, Lucie, Malviya, Shruti, De Vargas, Colomban, Karsenti, Eric, Bowler, Chris, De Monte, Silvia

Journal:

Nature Ecology & Evolution

Year:

2018

Language:

english

File:

PDF, 4.23 MB

english, 2018

31

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

Zinger, Lucie, Amaral-Zettler, Linda A., Fuhrman, Jed A., Horner-Devine, M. Claire, Huse, Susan M., Welch, David B. Mark, Martiny, Jennifer B. H., Sogin, Mitchell, Boetius, Antje, Ramette, Alban, Gilb

Journal:

Year:

2011

Language:

english

File:

PDF, 2.67 MB

english, 2011

32

Body size determines soil community assembly in a tropical forest

Zinger, Lucie, Taberlet, Pierre, Schimann, Heidy, Bonin, Aurélie, Boyer, Frédéric, De Barba, Marta, Gaucher, Philippe, Gielly, Ludovic, Giguet-Covex, Charline, Iribar, Amaia, Réjou-Méchain, Maxime, Ra

Journal:

Molecular Ecology

Year:

2018

Language:

english

File:

PDF, 1.15 MB

english, 2018

33

One‐locus‐several‐primers: A strategy to improve the taxonomic and haplotypic coverage in diet metabarcoding studies

Corse, Emmanuel, Tougard, Christelle, Archambaud‐Suard, Gaït, Agnèse, Jean‐François, Messu Mandeng, Françoise D., Bilong Bilong, Charles F., Duneau, David, Zinger, Lucie, Chappaz, Rémi, Xu, Charles C.

Journal:

Ecology and Evolution

Year:

2019

Language:

english

File:

PDF, 2.22 MB

english, 2019

34

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

Zinger, Lucie, Bonin, Aurélie, Alsos, Inger G., Bálint, Miklós, Bik, Holly, Boyer, Frédéric, Chariton, Anthony A., Creer, Simon, Coissac, Eric, Deagle, Bruce E., De Barba, Marta, Dickie, Ian A., Dumbr

Journal:

Molecular Ecology

Year:

2019

Language:

english

File:

PDF, 666 KB

english, 2019

35

One‐locus‐several‐primers: A strategy to improve the taxonomic and haplotypic coverage in diet metabarcoding studies

Corse, Emmanuel, Tougard, Christelle, Archambaud‐Suard, Gaït, Agnèse, Jean‐François, Messu Mandeng, Françoise D., Bilong Bilong, Charles F., Duneau, David, Zinger, Lucie, Chappaz, Rémi, Xu, Charles C.

Journal:

Ecology and Evolution

Year:

2019

File:

PDF, 2.22 MB

2019

36

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

Zinger, Lucie, Bonin, Aurélie, Alsos, Inger G., Bálint, Miklós, Bik, Holly, Boyer, Frédéric, Chariton, Anthony A., Creer, Simon, Coissac, Eric, Deagle, Bruce E., De Barba, Marta, Dickie, Ian A., Dumbr

Journal:

Molecular Ecology

Year:

2019

File:

PDF, 666 KB

2019

37

Multi-trophic β-diversity mediates the effect of environmental gradients on the turnover of multiple ecosystem functions

Martinez-Almoyna, Camille, Thuiller, Wilfried, Chalmandrier, Loïc, Ohlmann, Marc, Foulquier, Arnaud, Clément, Jean-Christophe, Zinger, Lucie, Münkemüller, Tamara

Journal:

Functional Ecology

Year:

2019

Language:

english

File:

PDF, 1.50 MB

english, 2019

38

Multi-trophic β-diversity mediates the effect of environmental gradients on the turnover of multiple ecosystem functions

Martinez-Almoyna, Camille, Thuiller, Wilfried, Chalmandrier, Loïc, Ohlmann, Marc, Foulquier, Arnaud, Clément, Jean-Christophe, Zinger, Lucie, Münkemüller, Tamara

Journal:

Functional Ecology

Year:

2019

File:

PDF, 1.50 MB

2019

39

The relative importance of ecological drivers of arbuscular mycorrhizal fungal distribution varies with taxon phylogenetic resolution

Roy, Julien, Mazel, Florent, Sosa‐Hernández, Moisés A., Dueñas, Juan F., Hempel, Stefan, Zinger, Lucie, Rillig, Matthias C.

Journal:

New Phytologist

Year:

2019

Language:

english

File:

PDF, 892 KB

english, 2019

40

From environmental DNA sequences to ecological conclusions: How strong is the influence of methodological choices?

Calderón‐Sanou, Irene, Münkemüller, Tamara, Boyer, Frédéric, Zinger, Lucie, Thuiller, Wilfried

Journal:

Journal of Biogeography

Year:

2019

Language:

english

File:

PDF, 1.94 MB

english, 2019

41

Altered trophic interactions in warming climates: consequences for predator diet breadth and fitness

Bestion, Elvire, Soriano-Redondo, Andrea, Cucherousset, Julien, Jacob, Staffan, White, Joël, Zinger, Lucie, Fourtune, Lisa, Di Gesu, Lucie, Teyssier, Aimeric, Cote, Julien

Journal:

Proceedings Biological Sciences

Year:

2019

Language:

english

File:

PDF, 634 KB

english, 2019

42

Latent Dirichlet Allocation reveals spatial and taxonomic structure in a DNA‐based census of soil biodiversity from a tropical forest

Sommeria‐Klein, Guilhem, Zinger, Lucie, Coissac, Eric, Iribar, Amaia, Schimann, Heidy, Taberlet, Pierre, Chave, Jérôme

Journal:

Molecular Ecology Resources

Year:

2019

File:

PDF, 25.52 MB

2019

43

Environmental and biotic drivers of soil microbial Î²âdiversity across spatial and phylogenetic scales

Chalmandrier, LoÃ¯c, Pansu, Johan, Zinger, Lucie, Boyer, Frederic, Coissac, Eric, GÃ©nin, Alexandre, Gielly, Ludovic, Lavergne, SÃ©bastien, Legay, Nicolas, Schilling, Vincent, Taberlet, Pierre, MÃ¼nke

Journal:

Year:

2019

File:

PDF, 2.87 MB

2019

44

Disentangling the assembly mechanisms of ant cuticular bacterial communities of two Amazonian ant species sharing a common arboreal nest

Birer, Caroline, Moreau, Corrie S., Tysklind, Niklas, Zinger, Lucie, Duplais, Christophe

Journal:

Molecular Ecology

Year:

2020

File:

PDF, 13.48 MB

2020